PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000364G1150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 214aa    MW: 23613.7 Da    PI: 6.6765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000364G1150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-1974123255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g
  PH01000364G1150  74 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFVTAEAAARAYDRAARRIRG 123
                      69*******.**********843...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.66E-1673132No hitNo description
PROSITE profilePS5103224.27674131IPR001471AP2/ERF domain
PfamPF008472.0E-1274123IPR001471AP2/ERF domain
SMARTSM003802.3E-3774137IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2274132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-3175132IPR001471AP2/ERF domain
PRINTSPR003674.2E-117586IPR001471AP2/ERF domain
PRINTSPR003674.2E-1197113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MCGGAIISEF IPRRDHRAAG GNKRSLFAAD FWPQADAAFD VPADHEPSTE LTGACTFTPD  60
QVAGPSKKRE RKTLYRGIRR RPWGKWAAEI RDPAKGARVW LGTFVTAEAA ARAYDRAARR  120
IRGTKAKVNF PNEEYPPLDP ANHDARMAMP CGELMDYDAV MAGFFHQPYV ADAVPVTAAP  180
EEAPTVAYVH QLPPQQEAGL ELWSFDSIDT TVPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2275131663ATERF1
3gcc_A2e-2275131663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16781KRERKTLYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0968360.0FP096836.1 Phyllostachys edulis cDNA clone: bphyem109m14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644689.12e-83PREDICTED: ethylene-responsive transcription factor RAP2-3
SwissprotP427362e-37RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0E0LPQ77e-91A0A0E0LPQ7_ORYPU; Uncharacterized protein
STRINGORGLA07G0205000.13e-83(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-29ethylene-responsive element binding protein